EMMA Endometrial Microbiome Test in London

The EMMA test (Endometrial Microbiome Metagenomic Analysis) examines the bacteria living in your womb lining — how much of that population is Lactobacillus, and how much is not. The test is £890, and it can only be arranged after a gynaecology consultation with our team, which is £300 and charged separately. There is no route to the test on its own.

We would rather be straight with you before you read any further. EMMA is not on the HFEA’s rated list of IVF add-ons, which is not the same thing as being endorsed. The evidence behind it is observational rather than randomised, and ESHRE’s 2023 guidance states that uterine and vaginal microbiome profiling is not recommended. We offer the test, we will explain it honestly, and for a good number of people the answer at the consultation will be that it is unlikely to add anything.

Available atLPC City (E1)

You cannot book the EMMA test on its own

Every endometrial test we offer starts with a gynaecology consultation with our team. That consultation is £300, and the EMMA test is £890 charged on top of it. This is not a formality: the consultation is where a consultant gynaecologist reviews your history, decides whether endometrial testing is reasonable for you at all, and plans the timing of the biopsy within your cycle. If EMMA is not the right test for you, we will say so — and you will have paid £300 rather than £1,190. Book the £300 gynaecology consultation, or see the full fees list.

What the EMMA test is

EMMA stands for Endometrial Microbiome Metagenomic Analysis. It is a laboratory test, run by Igenomix, on a small sample of your womb lining. What it reports is the bacterial make-up of that lining: how much of the bacterial population is Lactobacillus, and which other organisms are present and in what quantity.

The reasoning behind it is that the endometrium is not sterile. It carries its own small bacterial community, and several observational studies have found that women whose endometrial samples are dominated by Lactobacillus tend to have better outcomes after embryo transfer than women whose samples are not. EMMA measures that balance and tells you which group your sample falls into.

EMMA also includes ALICE — Analysis of Infectious Chronic Endometritis — at no extra cost, from the same sample. ALICE looks for the bacteria most often implicated in chronic endometritis, a low-grade and usually symptomless inflammation of the womb lining. If you were considering both, you only need EMMA; buying ALICE separately at £665 alongside it would be paying twice for one analysis.

EMMA is also one of the three tests that make up EndomeTRIO, alongside ALICE and ERA. If your clinician thinks more than one of them is worth doing, the combined package is the cheaper route — but it is not automatically the better one. The HFEA rates endometrial receptivity testing, which is what ERA is, red. EMMA carries no HFEA rating of any kind, because endometrial microbiome testing has never been assessed by the regulator at all. That is an absence of independent information, not a better verdict.

One point about the name, because it matters. “Metagenomic analysis” implies broad sequencing of everything present, and the original research in this field did use 16S rRNA gene sequencing. The commercial EMMA test Igenomix runs today uses a targeted real-time PCR panel: it measures a defined list of reproductive-tract bacteria rather than discovering what is there from scratch. Anything outside that panel is not reported, and Igenomix states that a negative result does not exclude other endometrial pathogens.

EMMA at a glance

The essentials in one place, before the detail below.

  • Analyses the bacterial make-up of the womb lining from a single endometrial sample
  • Reports how much of the bacterial population is Lactobacillus, and what else is present
  • Includes the ALICE chronic endometritis analysis at no additional charge
  • £890 for the test, plus the £300 gynaecology consultation charged separately
  • Requires a consultation with our gynaecology team first — the test cannot be booked directly
  • Sample taken in clinic in a short outpatient procedure, timed to a specific point in your cycle
  • Run by Igenomix using a targeted real-time PCR bacterial panel
  • Not on the HFEA’s rated list of IVF add-ons — unrated, which is not the same as approved
  • ESHRE’s 2023 recurrent implantation failure guidance states that uterine and vaginal microbiome profiling is not recommended
  • The supporting evidence is observational and prospective cohort, not randomised controlled trials
  • A result describes what was in your sample; it does not predict whether a transfer will succeed

EMMA test key facts

£890 The EMMA test itself, charged in addition to the consultation fee
+£300 Gynaecology consultation, required before any endometrial test and billed separately
ALICE included The chronic endometritis analysis comes with EMMA at no extra cost
1 sample A single endometrial biopsy taken in clinic, timed to your cycle
Not rated EMMA does not appear on the HFEA’s traffic-light list of IVF treatment add-ons
Observational The strongest evidence is prospective cohort data, not a randomised trial

Where EMMA stands with the regulator and the guidelines

EMMA and ALICE are not currently rated by the HFEA. The regulator’s treatment add-ons list rates “endometrial receptivity testing” red — a rating that applies to ERA, and to EndomeTRIO because EndomeTRIO contains ERA — but there is no traffic light for endometrial microbiome testing at all. Unrated is not the same as endorsed: it means the regulator has not assessed it, so you have less independent information to go on, not more. Separately, ESHRE’s 2023 good practice recommendations on recurrent implantation failure state that uterine and vaginal microbiome profiling is not recommended, while assessment for chronic endometritis — the part ALICE covers — can be considered. We think you should know both of those things before you spend £890.

How the EMMA test works

There are three stages: taking the sample, analysing it, and working out what the numbers mean for you. The third is the part that needs a clinician, and the part where most of the uncertainty sits.

01

Taking the endometrial sample

The sample is a small piece of womb lining, drawn up through a fine flexible catheter passed through the cervix. It takes a few minutes, it is done in clinic, and you go home straight afterwards.

Timing matters a great deal. The sample has to be taken at a defined point in your cycle — in a natural cycle, around the mid-luteal window; in a medicated cycle, after a specified number of days of progesterone. Your gynaecologist works the date out with you at the consultation, which is one of the reasons the consultation cannot be skipped.

You should not be taking antibiotics in the weeks beforehand, and local vaginal treatments and probiotics have to stop as well, because all of them change what the laboratory finds. We give you the full list at the consultation.

02

What the laboratory measures

The sample goes to Igenomix. The current EMMA assay uses real-time PCR against a defined panel of reproductive-tract bacteria, quantifying how much of each organism is present.

The headline number is the proportion of the bacterial population made up of Lactobacillus. The convention used in the underlying research is a threshold of around 90 per cent: at or above it, a sample is described as Lactobacillus-dominant; below it, as non-dominant, or dysbiotic.

That threshold is a research convention rather than a biological law. There is no internationally agreed definition of a healthy endometrial microbiome, and different laboratories using different methods have used different cut-offs.

  • Lactobacillus-dominant — most of the bacterial signal in the sample is Lactobacillus
  • Dysbiotic or non-dominant — Lactobacillus makes up less of the picture and other genera are more prominent
  • Pathogen detected — organisms associated with chronic endometritis are found (this is the ALICE component)
03

The ALICE component, included

ALICE looks for the specific organisms most often implicated in chronic endometritis — among them Chlamydia trachomatis, Neisseria gonorrhoeae, Enterococcus, Escherichia coli, Klebsiella, Streptococcus, Staphylococcus, Mycoplasma and Ureaplasma.

Chronic endometritis is a persistent, low-grade inflammation of the womb lining that usually causes no symptoms at all. It is the one element of this picture that ESHRE says can be considered, and if it is diagnosed, ESHRE says treatment with antibiotics can be considered.

ALICE is a molecular test for bacterial DNA. It is not the same as the traditional diagnosis of chronic endometritis, which a pathologist makes by finding plasma cells in a biopsy under the microscope. The two do not always agree, and a positive molecular result is not automatically a diagnosis. Where a histological answer is what is actually needed, our hysteroscopy service can take a directed biopsy.

04

Low biomass — the technical caveat that matters

The womb lining carries very few bacteria compared with the vagina. Testing a low-biomass sample is genuinely difficult: the catheter has to travel through the vagina and cervix to reach the endometrium, so even a small amount of carry-over from the lower genital tract can change the answer.

Reviews of this field have been candid about it. Contamination during sampling cannot be fully excluded, laboratory reagents themselves carry background bacterial DNA, and there is no agreed protocol for sampling or analysis across laboratories.

None of that makes a result meaningless. It does mean the result is a snapshot from one sample, taken one way, on one day — one input among several rather than a verdict.

05

What a result does and does not tell you

A result tells you the bacterial composition of the sample the laboratory received. That is the honest limit of it.

It does not tell you whether treating what it found will change anything for you, and it does not explain why a previous transfer failed. A Lactobacillus-dominant result is not a promise: transfers fail in women with entirely Lactobacillus-dominant linings, and succeed in women without.

We go through your report with you line by line and set out the options — including the option of doing nothing about it, which is sometimes the right one.

What the evidence actually shows

The idea behind EMMA comes from a body of observational research, and it is worth being precise about what kind of evidence that is.

The foundational study, published in the American Journal of Obstetrics and Gynecology in 2016, was a small case-control comparison rather than a trial: 35 infertile patients undergoing IVF, whose outcomes were compared once the endometrium had been classified receptive. It reported live birth in 58.8 per cent of the Lactobacillus-dominant group and 6.

7 per cent of the non-dominant group. The paper publishes those outcomes as rates rather than counts, and the rates resolve to only one possible pair of groups: 10 live births among 17 women in the dominant group, and 1 live birth among 15 women in the non-dominant group.

One baby. That is the whole of the non-dominant result, and it is why we would ask you to hold these numbers very lightly rather than let them sit there looking decisive. A second baby among those 15 women would double the lower figure; one fewer among the 17 would pull the higher one down by six points.

Nobody was randomised, so the two groups could have differed in age, embryo quality or underlying diagnosis every bit as much as they differed in bacteria — and with 17 women against 15 there is no way to separate those things out. A gap this dramatic from a base this small is precisely the kind of early result that larger work often fails to reproduce.

We quote it because it is the study the test was built on, not because we think it tells you what will happen to you.

A larger and better-designed study followed in the journal Microbiome in 2022: a multicentre prospective observational study of 342 infertile patients. It found that a dysbiotic profile made up of Atopobium, Bifidobacterium, Chryseobacterium, Gardnerella, Haemophilus, Klebsiella, Neisseria, Staphylococcus and Streptococcus was associated with unsuccessful outcomes, and that Lactobacillus was consistently enriched in the patients who went on to have a live birth.

“Associated with” is the load-bearing phrase. Both studies are observational: they recorded a pattern between what was in the sample and what happened afterwards. Neither randomised anyone to treatment, so neither can show that changing the microbiome changes the outcome. It is entirely possible that a dysbiotic lining is a marker of some other problem rather than the cause of one. ESHRE did not simply leave that question hanging: its 2023 good practice recommendations state plainly that uterine and vaginal microbiome profiling is not recommended.

There is a further finding worth sitting with if your reason for testing is repeated failed transfers rather than repeated losses. A 2024 systematic review and meta-analysis in Frontiers in Immunology found chronic endometritis in 37.6 per cent of women with recurrent pregnancy loss (184 of 489) against 16.4 per cent of controls (57 of 346) — a clear and statistically significant difference.

For recurrent implantation failure, the same review found no association: chronic endometritis in 4 of 63 women with implantation failure (6.35 per cent) against 4 of 69 controls (5.8 per cent), an odds ratio of 1.10, confidence interval 0.26 to 4.61, p = 0.90. The rates in the two groups were, in the reviewers’ own words, comparable. They also point out that the whole comparison rests on 132 women, which is too few to settle the question either way.

For contrast, ERA has been through a proper randomised controlled trial — 767 patients, double-blind, published in JAMA in 2022 — and receptivity-guided timing did not significantly improve live birth, at 58.5 per cent against 61.9 per cent for standard timing. That is why the HFEA rates endometrial receptivity testing red. No equivalent trial has been run for EMMA.

Its absence from the HFEA list reflects the fact that it has not been assessed, not that it has passed. If you would like to work through what that means for your own situation, that is what the gynaecology consultation is for.

If your result comes back dysbiotic

A dysbiotic result is not a diagnosis and it is not an emergency. It is a description of a sample. What follows is a conversation with your gynaecologist, not an automatic prescription.

In practice there are three broad routes, and which is appropriate depends on what was actually found. If ALICE has detected organisms associated with chronic endometritis, a targeted course of antibiotics may be considered — ESHRE’s position is that where chronic endometritis is diagnosed, antibiotic treatment can be considered. If the finding is a low proportion of Lactobacillus without a specific pathogen, oral or vaginal probiotics containing Lactobacillus are sometimes suggested. And in some cases the reasonable answer is to change nothing and proceed with your transfer as planned.

We will not tell you that any of these improves your chance of a live birth, because the trials that would justify saying so have not been done.

The pooled evidence for treating chronic endometritis comes from a 2018 meta-analysis of five observational studies and 796 women with repeated implantation failure, and it is worth reading carefully: women given antibiotics without a repeat biopsy confirming the inflammation had cleared did no better than untreated controls.

The better outcomes it reports come from comparing women whose endometritis was confirmed resolved with women in whom it persisted — which compares two groups who turned out to respond differently, not a randomised test of the treatment.

Antibiotics are not cost-free either. They carry side effects, they disturb your vaginal and gut flora as well as your endometrial ones, and repeat courses have their own downsides. Weighing an uncertain benefit against those costs, with your full history in front of them, is exactly what a consultant gynaecologist is for.

Where a structural cause is more likely than a microbial one, other investigations may be more useful: hysteroscopy to look directly inside the cavity, a pelvic scan or saline infusion sonohysterography to assess the cavity outline, or our recurrent miscarriage assessment if you have had repeated losses.

Comparison

EMMA, ALICE, ERA and EndomeTRIO compared

All four are Igenomix tests run on an endometrial sample, and all four require the £300 gynaecology consultation before they can be arranged. The prices below are for the test alone.

Full detail sits on each test’s own page — see ERA, ALICE and EndomeTRIO.

FeatureEMMAALICEERAEndomeTRIO
What it looks atBacteria linked to chronic endometritisTiming of the implantation windowAll three of the above
Test price£665£1,100£1,450
Gynaecology consultation (required, extra)£300£300£300
Includes ALICEIs ALICE–✔
HFEA traffic-light ratingNot ratedRed (as endometrial receptivity testing)Not rated as a package; contains ERA
Strongest evidence typeObservational studies of chronic endometritis, pooled in a 2024 meta-analysisRandomised controlled trial, 767 patientsMixed — see each test
What that evidence foundChronic endometritis commoner in recurrent pregnancy loss; no significant link to implantation failureNo significant difference in live birthSee each test
Sample requiredOne endometrial biopsyOne endometrial biopsyOne endometrial biopsy

Prices are for the test only. The £300 gynaecology consultation is required before any of them and is charged separately.

A red HFEA rating means: there are potential safety concerns and/or, on balance, the findings from moderate/high quality evidence shows that this add-on may reduce treatment effectiveness.

“Not rated” means the HFEA has not assessed the test. It is not a statement that the test works. The HFEA rates procedures rather than brand names: its red rating is for endometrial receptivity testing, which is what ERA is. EndomeTRIO has no rating of its own, but it contains ERA.

The ALICE evidence column reflects the 2024 Frontiers in Immunology systematic review of chronic endometritis listed in our sources, which pooled observational studies. No randomised trial of ALICE, EMMA or EndomeTRIO has been published.

How it works, step by step

1

Gynaecology consultation (£300)

You see a consultant gynaecologist, who takes a full history, reviews your previous cycles and investigations, and tells you honestly whether endometrial testing is likely to add anything. Some people leave this appointment without booking a test, and that is a legitimate outcome.

2

Deciding, and planning the timing

If you decide together to go ahead, the EMMA test is £890 on top of the consultation fee. The biopsy has to fall at a specific point in your cycle, so we plan the date with you and tell you which medications and vaginal preparations to stop beforehand.

3

The biopsy in clinic

A short outpatient procedure using a fine catheter. It usually takes a few minutes, feels like strong period cramping rather than sharp pain, and you go home the same day. Take painkillers an hour or two beforehand and expect light spotting afterwards.

4

Laboratory analysis

The sample travels to the Igenomix laboratory for analysis. Turnaround depends on the laboratory’s schedule and on whether the sample is adequate, so we give you a realistic timeframe when the sample is taken rather than a promise we cannot control.

5

Going through the result

Your gynaecologist talks the report through with you and sets out the options, including doing nothing. Where a treatment is worth considering, you will hear what the evidence for it is and, just as importantly, what it is not.

6

Sharing it with your fertility clinic

We send the report to you and, with your permission, directly to your fertility clinic, so whoever is running your transfer cycle has it in front of them.

Who might reasonably consider EMMA

None of these is a reason to test on its own. They are the situations in which a gynaecologist might think the conversation is worth having.

You have had repeated transfers of good-quality embryos that did not implant, and structural and hormonal causes have already been looked for

You have had recurrent pregnancy loss and chronic endometritis has not yet been excluded — see our recurrent miscarriage assessment

You have a history of pelvic infection, a complicated intrauterine device, or previous uterine surgery

Your fertility clinic has specifically asked for endometrial microbiome or chronic endometritis testing before your next transfer

You have already had a hysteroscopy or pelvic scan that did not explain what is happening

You want the ALICE analysis, in which case EMMA gives you both analyses for less than buying them separately

When we would tell you not to bother

This is the part most clinics leave out, so we will say it plainly. For most people trying to conceive, EMMA will not change anything, and £890 for the test on top of £300 for the consultation is a great deal of money to spend on information you cannot act on with much confidence.

If you are early in your journey and have not yet had the basics — a fertility health check, assessment of your tubes with a HyCoSy, a look at the cavity, follicle tracking or endometrial lining monitoring — those come first, cost considerably less, and are far more likely to find something that matters. Our trying to conceive guide sets out the usual order of investigation.

If you have had one failed transfer, that is not on its own a reason to start testing the microbiome. Failed transfers are common, embryo quality accounts for a great deal of them, and testing after a single disappointment tends to produce findings you then feel obliged to treat. If you are already pregnant, EMMA is not relevant at all — IVF pregnancy monitoring is what you want.

We would rather your £300 consultation ended with “not yet” than that you added £890 for a test which tells you something true and unhelpful. Our gynaecology services and fees pages set out the alternatives, and the consultation costs the same whether or not you go on to have any test at all.

Important

This information is intended for general educational purposes only and does not constitute medical advice. Endometrial microbiome testing is not routinely recommended in UK or European fertility guidance, and no result from it can predict whether a treatment cycle will succeed. Please discuss your own circumstances with a qualified clinician before making any decision about testing or treatment.

Your questions answered

The EMMA test — your questions answered

How much does the EMMA test cost in London?

The EMMA test is £890. On top of that, a gynaecology consultation with our team is required before any endometrial test can be arranged, and that is £300, charged separately. The two together come to £1,190, but we quote them separately because they are separate things — you can have the consultation without going on to have the test, and a good number of people do exactly that.

The £890 covers the endometrial biopsy taken in clinic, the Igenomix laboratory analysis including the ALICE chronic endometritis component, and your gynaecologist going through the report with you afterwards.

You cannot book the test on its own; there is no route to it that does not go through the consultation. Book the £300 gynaecology consultation, or see the full fees list.

Does the EMMA test include ALICE?

Yes. ALICE — Analysis of Infectious Chronic Endometritis — is included in EMMA at no extra cost, and both analyses run on the same sample.

That matters financially. ALICE on its own is £665, so if you want both analyses, EMMA at £890 is the sensible order. If chronic endometritis is genuinely the only question you have, ALICE alone is the cheaper route, and your gynaecologist will tell you so.

If your clinician also wants the timing of your implantation window assessed, EndomeTRIO bundles EMMA, ALICE and ERA into one package — though it inherits ERA’s red HFEA rating, which is worth reading about before you choose it.

Is the EMMA test approved or rated by the HFEA?

No. EMMA does not appear on the HFEA’s traffic-light list of treatment add-ons at all, which makes it unrated rather than approved.

It is worth being clear about what that does and does not mean. The HFEA rates “endometrial receptivity testing” red, and that red rating applies to ERA and to EndomeTRIO because EndomeTRIO contains ERA. Endometrial microbiome testing is simply not on the list, so there is no independent regulatory assessment of it for you to read.

Separately, ESHRE’s 2023 good practice recommendations on recurrent implantation failure state that uterine and vaginal microbiome profiling is not recommended, while assessment for chronic endometritis can be considered. We would rather you knew both of those things before you paid than after.

How strong is the evidence behind the EMMA test?

Suggestive, but not strong, and not the kind of evidence that would allow anyone to promise you a better outcome.

The largest study is a multicentre prospective observational study of 342 infertile patients published in Microbiome in 2022, which found that a dysbiotic endometrial profile was associated with unsuccessful outcomes and that Lactobacillus was enriched in patients who had a live birth.

The study the test was originally built on, published in the American Journal of Obstetrics and Gynecology in 2016, was a case-control comparison of just 35 patients. The difference in live birth rates it reported is widely quoted and looks dramatic, but it comes from arms small enough that a single birth either way would shift it substantially.

We set those figures out in full, with their limitations, in the evidence section above.

Both are observational. Neither randomised anyone, so neither can show that acting on the result changes what happens next. That is a genuinely different standard of proof from the randomised trial that tested ERA in 767 patients and found no significant difference in live birth rate.

How is the endometrial sample taken, and does it hurt?

It is an outpatient biopsy. A fine, flexible catheter is passed through the cervix and a small sample of the womb lining is drawn up. The procedure takes a few minutes and you go home straight afterwards.

Most people describe it as strong period-type cramping for a short time rather than sharp pain. Taking ibuprofen or paracetamol an hour or two beforehand genuinely helps. Light spotting for a day or two afterwards is normal.

If you have had a difficult cervix, a painful procedure in the past, or you are simply anxious about it, tell us at the consultation. The experience is similar to an endometrial scratch or an outpatient hysteroscopy, and we can plan around it.

When in my cycle does the EMMA sample have to be taken?

At a defined point — and getting it wrong wastes the test. In a natural cycle the sample is taken in the mid-luteal phase, around the time the endometrium would be receptive. In a hormone-replacement cycle it is taken after a specified number of days of progesterone.

Your gynaecologist works the exact date out with you at the consultation, using your cycle length, any monitoring you are already having and the protocol your fertility clinic follows. If you are having follicle tracking or endometrial lining scans with us, that makes the timing straightforward.

You should not be taking antibiotics in the weeks beforehand, and local vaginal treatments and probiotics need to stop as well, because all of them change what the laboratory sees. We give you the full list in advance.

What does a Lactobacillus-dominant result mean?

It means that in the sample analysed, most of the bacterial signal was Lactobacillus. The convention used in the research behind the test is a threshold of around 90 per cent.

What it does not mean is that your next transfer will work. Lactobacillus dominance has been associated with better outcomes in cohort studies, but transfers fail in plenty of women with entirely Lactobacillus-dominant linings. A dominant result removes one hypothesis from the list; it does not provide a guarantee.

It is also worth knowing that there is no internationally agreed definition of a healthy endometrial microbiome. The 90 per cent figure is a research convention, and different laboratories using different methods have used different cut-offs.

What happens if my EMMA result is dysbiotic?

You have a conversation with your gynaecologist, and what follows depends on what was actually found. If ALICE has identified organisms associated with chronic endometritis, a targeted course of antibiotics may be considered. If the finding is simply a low proportion of Lactobacillus without a specific pathogen, probiotics are sometimes suggested. Doing nothing is also a legitimate option, and sometimes the right one.

We will not tell you that any of these improves your chance of a baby, because the trials that would justify that claim have not been done. The pooled evidence on antibiotics for chronic endometritis is observational rather than randomised, and in the 2018 meta-analysis listed in our sources, women treated without a repeat biopsy confirming the inflammation had cleared did no better than untreated controls.

Antibiotics also carry real costs — side effects, disruption of your other bacterial populations, and the general problem of repeat courses. Weighing that against an uncertain benefit is precisely what the consultation is for.

What is the difference between EMMA and ALICE?

They answer different questions from the same sample. EMMA describes the overall bacterial balance of the lining — how much Lactobacillus, how much of everything else. ALICE looks specifically for the bacteria most often implicated in chronic endometritis.

Because EMMA includes ALICE, one test gives you both. Buying ALICE separately only makes sense if chronic endometritis is the only thing you want to know about, and it is £665 rather than £890.

Neither is the same as the traditional diagnosis of chronic endometritis, which a pathologist makes by finding plasma cells in a biopsy under the microscope. Molecular detection of bacterial DNA and histological diagnosis do not always agree, and where the histological answer is what matters, a directed biopsy at hysteroscopy may be more useful.

Can I have the EMMA test without a consultation first?

No. Every endometrial test we offer requires a gynaecology consultation with our team first, and there is no way around it.

This is not an upsell. The sample has to be timed to your cycle, there is a list of medications and vaginal preparations that must be stopped beforehand, someone has to decide the test is appropriate for you at all, and someone has to interpret the report afterwards. None of that works without a clinician who knows your history.

The consultation is £300 and the test is £890 on top. If the consultation concludes that EMMA would not help you, you will have spent £300 and saved £890. You can book a gynaecology consultation here, or read the full fees list first.

Does the EMMA test actually involve sequencing?

Not in the way the name suggests. “Metagenomic analysis” implies broad sequencing of the whole microbial community, and the original research behind endometrial microbiome testing did use 16S rRNA gene sequencing.

The commercial EMMA test Igenomix runs today uses real-time PCR against a defined panel of reproductive-tract bacteria. It measures how much of each listed organism is present rather than discovering what is there from scratch.

The practical consequence is that anything outside that panel is not reported. Igenomix states that a negative result does not exclude other endometrial pathogens, and that the test does not detect antibiotic resistance.

Will my IVF clinic accept an EMMA result from London Pregnancy Clinic?

In most cases yes. EMMA is a standard Igenomix test and the report is the same report wherever the sample was taken. We send it to you and, with your permission, directly to your fertility clinic.

It is worth checking with your clinic before you book, though, particularly if you are being treated abroad. Some clinics have a preferred laboratory, or want the sample taken within a specific protocol cycle, and that is far easier to confirm in advance than to discover after a biopsy.

We work regularly with fertility clinics in the UK and overseas and are happy to speak to your team about what they need. See IVF pregnancy monitoring for the scanning side of that relationship.

How long do EMMA results take?

Turnaround depends on the laboratory, and we would rather give you a realistic figure when your sample is taken than publish a number we cannot control. In practice it usually runs to a few weeks rather than a few days, because the sample travels to the Igenomix laboratory and the analysis is batched.

Occasionally a sample is inadequate and needs repeating, which adds a cycle. Your gynaecologist will explain what that means for your transfer timing if it happens.

We contact you once the report has been reviewed and go through it with you, rather than emailing a set of percentages without any context.

Is the EMMA test worth it?

For most people, probably not — and we would rather say that than sell you something. If you have not yet had the standard investigations, or you have had a single failed transfer, the honest answer is that your money is better spent elsewhere for now.

Where it can be worth considering is a narrower situation: repeated failed transfers of good embryos, or recurrent loss, where structural and hormonal causes have already been examined and chronic endometritis has not been excluded. Even then, the result may not change what you do.

The most useful thing we can offer is the conversation. Book the £300 gynaecology consultation, bring your history and your previous cycle records, and let a consultant tell you whether this test has anything to add for you. Sometimes it does. Often it does not, and you should hear that from a clinician rather than from a price list.

Contact

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For urgent matters please call 020 3687 2939.

Sources & clinical references

The figures and clinical statements on this page are drawn from the sources below. Guidance evolves — always discuss your individual circumstances with a clinician.

  1. Human Fertilisation and Embryology Authority (HFEA)Treatment add-ons with limited evidence — traffic-light ratings (endometrial receptivity testing rated red; no rating listed for endometrial microbiome testing)Accessed July 2026
  2. Human Fertilisation and Embryology Authority (HFEA)Endometrial receptivity testing — red rating and supporting explanation2023
  3. ESHRE (Human Reproduction Open)ESHRE good practice recommendations on recurrent implantation failure — uterine and vaginal microbiome profiling is not recommended; assessment for chronic endometritis can be considered2023
  4. Microbiome (Moreno I et al.)Endometrial microbiota composition is associated with reproductive outcome in infertile patients — multicentre prospective observational study, 342 patients2022
  5. American Journal of Obstetrics and Gynecology (Moreno I et al.), via PubMedEvidence that the endometrial microbiota has an effect on implantation success or failure — Lactobacillus-dominated vs non-dominated profiles in 35 infertile patients2016
  6. JAMA (Doyle N et al.)Effect of timing by endometrial receptivity testing vs standard timing of frozen embryo transfer on live birth in patients undergoing IVF — double-blind randomised clinical trial, 767 patients, no significant difference in live birth (58.5% vs 61.9%)2022
  7. Frontiers in Immunology (Ticconi C et al.)Chronic endometritis and recurrent reproductive failure: a systematic review and meta-analysis — prevalence in recurrent pregnancy loss and recurrent implantation failure2024
  8. Fertility and Sterility (Vitagliano A et al.), via PubMedEffects of chronic endometritis therapy on in vitro fertilization outcome in women with repeated implantation failure — systematic review and meta-analysis of five observational studies, 796 patients; antibiotic therapy without histological confirmation of cure showed no advantage over untreated controls2018
  9. Medicina (Kaunas) — Kaluanga Bwanga P et al.The endometrial microbiota: challenges and prospects — low biomass, contamination risk, absence of an agreed healthy composition and of standardised sampling protocols2023
  10. IgenomixEMMA — Endometrial Microbiome Metagenomic Analysis (test mechanics: real-time PCR panel, ALICE included, negative result does not exclude other endometrial pathogens, does not detect antibiotic resistance)Accessed July 2026